HL_6ZMI_085

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

6ZMI|1|L8|U|124, 6ZMI|1|L8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_085 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3871

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZMI|1|L8|G|122
6ZMI|1|L8|U|123
6ZMI|1|L8|U|124
6ZMI|1|L8|C|125
6ZMI|1|L8|C|126
6ZMI|1|L8|U|127
6ZMI|1|L8|C|128

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA