HL_6ZMI_096

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6ZMI|1|S2|C|502, 6ZMI|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_096 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2581

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZMI|1|S2|C|498
6ZMI|1|S2|G|499
6ZMI|1|S2|A|500
6ZMI|1|S2|C|501
6ZMI|1|S2|C|502
6ZMI|1|S2|C|503
6ZMI|1|S2|G|504

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24