HL_6ZMI_103
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 6ZMI|1|S2|G|891, 6ZMI|1|S2|G|895, 6ZMI|1|S2|U|899
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_103 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.3285
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6ZMI|1|S2|U|885
6ZMI|1|S2|A|886
6ZMI|1|S2|U|887
6ZMI|1|S2|U|888
6ZMI|1|S2|U|889
6ZMI|1|S2|U|890
6ZMI|1|S2|G|891
6ZMI|1|S2|U|892
6ZMI|1|S2|U|893
6ZMI|1|S2|G|894
6ZMI|1|S2|G|895
6ZMI|1|S2|U|896
6ZMI|1|S2|U|897
6ZMI|1|S2|U|898
6ZMI|1|S2|U|899
6ZMI|1|S2|C|900
6ZMI|1|S2|G|901
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SL
- 40S ribosomal protein S11
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