HL_6ZMO_002
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUCAAGUU
- Length
- 9 nucleotides
- Bulged bases
- 6ZMO|1|CB|G|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMO_002 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.3966
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6ZMO|1|CB|A|32
6ZMO|1|CB|C|33
6ZMO|1|CB|U|34
6ZMO|1|CB|C|35
6ZMO|1|CB|A|36
6ZMO|1|CB|A|37
6ZMO|1|CB|G|38
6ZMO|1|CB|U|39
6ZMO|1|CB|U|40
Current chains
- Chain CB
- tRNA
Nearby chains
- Chain CE
- Cell growth-regulating nucleolar protein
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
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