HL_6ZMO_031

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6ZMO|1|L5|A|1630, 6ZMO|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_031 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZMO|1|L5|G|1627
6ZMO|1|L5|C|1628
6ZMO|1|L5|G|1629
6ZMO|1|L5|A|1630
6ZMO|1|L5|A|1631
6ZMO|1|L5|A|1632
6ZMO|1|L5|G|1633
6ZMO|1|L5|A|1634
6ZMO|1|L5|C|1635

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37