HL_6ZMO_033

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

6ZMO|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_033 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3124

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZMO|1|L5|G|1759
6ZMO|1|L5|G|1760
6ZMO|1|L5|G|1761
6ZMO|1|L5|C|1762
6ZMO|1|L5|C|1763
6ZMO|1|L5|G|1764
6ZMO|1|L5|A|1765
6ZMO|1|L5|A|1766
6ZMO|1|L5|A|1767
6ZMO|1|L5|C|1768
6ZMO|1|L5|G|1769
6ZMO|1|L5|A|1770
6ZMO|1|L5|U|1771
6ZMO|1|L5|C|1772
6ZMO|1|L5|U|1773

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LJ

60S ribosomal protein L11

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18