HL_6ZMO_083

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6ZMO|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_083 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2178

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZMO|1|L5|C|5021
6ZMO|1|L5|U|5022
6ZMO|1|L5|C|5023
6ZMO|1|L5|C|5024
6ZMO|1|L5|C|5025
6ZMO|1|L5|U|5026
6ZMO|1|L5|C|5027
6ZMO|1|L5|G|5028

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8