HL_6ZMO_092

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6ZMO|1|S2|U|160, 6ZMO|1|S2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_092 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2172

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZMO|1|S2|G|156
6ZMO|1|S2|U|157
6ZMO|1|S2|A|158
6ZMO|1|S2|A|159
6ZMO|1|S2|U|160
6ZMO|1|S2|U|161
6ZMO|1|S2|C|162

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CD

Elongation factor 1-alpha 1

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24