HL_6ZMO_104
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUCGGCGGGGCCCGAA
- Length
- 17 nucleotides
- Bulged bases
- 6ZMO|1|S2|G|788
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMO_104 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.2165
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6ZMO|1|S2|U|747
6ZMO|1|S2|C|748
6ZMO|1|S2|U|749
6ZMO|1|S2|C|750
6ZMO|1|S2|G|751
6ZMO|1|S2|G|752
6ZMO|1|S2|C|753
6ZMO|1|S2|G|786
6ZMO|1|S2|G|787
6ZMO|1|S2|G|788
6ZMO|1|S2|G|789
6ZMO|1|S2|C|790
6ZMO|1|S2|C|791
6ZMO|1|S2|C|792
6ZMO|1|S2|G|793
6ZMO|1|S2|A|794
6ZMO|1|S2|A|795
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
Coloring options: