HL_6ZMO_107

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6ZMO|1|S2|G|891, 6ZMO|1|S2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_107 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2039

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZMO|1|S2|U|885
6ZMO|1|S2|A|886
6ZMO|1|S2|U|887
6ZMO|1|S2|U|888
6ZMO|1|S2|U|889
6ZMO|1|S2|U|890
6ZMO|1|S2|G|891
6ZMO|1|S2|U|892
6ZMO|1|S2|U|893
6ZMO|1|S2|G|894
6ZMO|1|S2|G|895
6ZMO|1|S2|U|896
6ZMO|1|S2|U|897
6ZMO|1|S2|U|898
6ZMO|1|S2|U|899
6ZMO|1|S2|C|900
6ZMO|1|S2|G|901

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6