HL_6ZMO_125

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6ZMO|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_125 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4286

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZMO|1|L5|C|1978
6ZMO|1|L5|A|1979
6ZMO|1|L5|U|1980
6ZMO|1|L5|G|1981
6ZMO|1|L5|G|1982
6ZMO|1|L5|A|1983
6ZMO|1|L5|A|1984
6ZMO|1|L5|G|1985
6ZMO|1|L5|U|1986
6ZMO|1|L5|C|1987
6ZMO|1|L5|G|1988

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain Lt

60S ribosomal protein L12