HL_6ZMW_006

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6ZMW|1|A|C|324, 6ZMW|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3383

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZMW|1|A|C|322
6ZMW|1|A|C|323
6ZMW|1|A|C|324
6ZMW|1|A|C|325
6ZMW|1|A|C|326
6ZMW|1|A|G|327
6ZMW|1|A|U|328
6ZMW|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains