HL_6ZMW_011

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6ZMW|1|A|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3659

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZMW|1|A|C|498
6ZMW|1|A|G|499
6ZMW|1|A|A|500
6ZMW|1|A|C|501
6ZMW|1|A|C|502
6ZMW|1|A|C|503
6ZMW|1|A|G|504

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain T

40S ribosomal protein S24