HL_6ZMW_014

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_014 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0777

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZMW|1|A|C|618
6ZMW|1|A|A|619
6ZMW|1|A|G|620
6ZMW|1|A|C|621
6ZMW|1|A|C|622
6ZMW|1|A|G|623

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23