HL_6ZN5_012
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZN5_012 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1352
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZN5|1|2|A|569
6ZN5|1|2|C|570
6ZN5|1|2|U|571
6ZN5|1|2|U|572
6ZN5|1|2|U|573
6ZN5|1|2|A|574
6ZN5|1|2|A|575
6ZN5|1|2|A|576
6ZN5|1|2|U|577
6ZN5|1|2|C|578
6ZN5|1|2|C|579
6ZN5|1|2|U|580
6ZN5|1|2|U|581
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: