Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZN5_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZN5_0021/2/69:80No text annotation
geometric
HL_361D_002
HL_13963.3
HL_6ZN5_0031/2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6ZN5_0041/2/197:202GNRA
geometric
HL_3RG5_007
HL_37824.8
HL_6ZN5_0051/2/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZN5_0061/2/377:387No text annotation
HL_6ZN5_0071/2/416:421No text annotation
homologous
HL_4V88_194
NA
HL_6ZN5_0081/2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6ZN5_0091/2/462:467UNCG
homologous
HL_4V88_196
NA
HL_6ZN5_0101/2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6ZN5_0111/2/539:544GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_6ZN5_0121/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_6ZN5_0131/2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6ZN5_0141/2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6ZN5_0331/2/885:901Purine riboswitch
geometric
HL_4LX6_002
HL_31585.4
HL_6ZN5_0171/2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_6ZN5_0181/2/994:999GNRA
homologous
HL_4V88_207
NA
HL_6ZN5_0191/2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6ZN5_0201/2/1114:1119No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6ZN5_0211/2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6ZN5_0221/2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6ZN5_0231/2/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_6ZN5_0241/2/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_6ZN5_0251/2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6ZN5_0261/2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6ZN5_0271/2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_6ZN5_0281/2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_6ZN5_0291/2/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_6ZN5_0301/2/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_6ZN5_0321/2/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_6ZN5_015No text annotation
HL_6ZN5_016No text annotation
HL_6ZN5_031No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZN5_0011/2/23:25,
1/2/649:651
Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_6ZN5_0021/2/34:36,
1/2/519:521
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6ZN5_0031/2/37:40,
1/2/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_6ZN5_0041/2/41:47,
1/2/479:481
No text annotation
geometric
IL_4V88_387
NA
IL_6ZN5_0051/2/49:51,
1/2/476:477
Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZN5_0061/2/57:62,
1/2/86:88
No text annotation
homologous
IL_4V88_389
NA
IL_6ZN5_0071/2/63:68,
1/2/81:85
No text annotation
homologous
IL_4V88_390
NA
IL_6ZN5_0081/2/108:110,
1/2/351:353
Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_6ZN5_0921/2/108:112,
1/2/349:353
Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_6ZN5_0091/2/110:112,
1/2/349:351
Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_6ZN5_0101/2/112:115,
1/2/348:349
Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZN5_0111/2/116:121,
1/2/343:347
No text annotation
homologous
IL_4V88_393
NA
IL_6ZN5_0121/2/123:124,
1/2/339:341
Minor groove platform
geometric
IL_4LFB_054
IL_51454.3
IL_6ZN5_0141/2/145:151,
1/2/167:174
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZN5_0151/2/152:154,
1/2/164:166
Isolated cWH basepair
geometric
IL_3CZW_002
NA
IL_6ZN5_0161/2/188:192,
1/2/207:211
Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_6ZN5_0171/2/216:219,
1/2/302:309
Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_6ZN5_0191/2/312:314,
1/2/336:337
Single bulged A
homologous
IL_4V88_399
NA
IL_6ZN5_0201/2/317:319,
1/2/332:333
Single stack bend
geometric
IL_5TBW_009
NA
IL_6ZN5_0211/2/359:364,
1/2/396:403
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZN5_0221/2/366:371,
1/2/393:394
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6ZN5_0231/2/411:413,
1/2/424:429
No text annotation
homologous
IL_4V88_404
NA
IL_6ZN5_0241/2/437:439,
1/2/454:456
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6ZN5_0251/2/459:461,
1/2/468:470
Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZN5_0261/2/487:489,
1/2/511:512
Single bulged U
geometric
IL_4LFB_014
IL_89505.4
IL_6ZN5_0271/2/491:495,
1/2/508:509
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6ZN5_0281/2/495:496,
1/2/506:508
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_6ZN5_0291/2/529:530,
1/2/554:556
Single bulged A
homologous
IL_4V88_409
NA
IL_6ZN5_0301/2/535:537,
1/2/546:549
Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_07785.1
IL_6ZN5_0311/2/563:565,
1/2/585:592
No text annotation
homologous
IL_8C3A_420
NA
IL_6ZN5_0321/2/566:569,
1/2/581:584
Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_6ZN5_0331/2/599:606,
1/2/636:637
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6ZN5_0341/2/606:608,
1/2/635:636
Single bulged U
homologous
IL_4V88_414
NA
IL_6ZN5_0351/2/611:617,
1/2/624:632
Kink-turn related
homologous
IL_8C3A_425
NA
IL_6ZN5_0361/2/663:665,
1/2/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_6ZN5_0371/2/665:671,
1/2/1161:1162
No text annotation
homologous
IL_4V88_416
NA
IL_6ZN5_0381/2/673:675,
1/2/1030:1032
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZN5_0391/2/676:680,
1/2/1025:1029
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6ZN5_0991/2/747:750,
1/2/793:795
No text annotation
geometric
IL_4P3T_002
NA
IL_6ZN5_0411/2/802:803,
1/2/860:863
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6ZN5_0421/2/805:807,
1/2/856:858
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZN5_0431/2/807:815,
1/2/849:856
No text annotation
geometric
IL_4V88_425
NA
IL_6ZN5_0441/2/874:876,
1/2/910:912
Isolated non-canonical cWW pair
geometric
IL_6IA2_004
IL_87907.2
IL_6ZN5_0451/2/877:879,
1/2/907:909
Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_6ZN5_0461/2/922:923,
1/2/1019:1022
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6ZN5_0931/2/925:926,
1/2/1015:1017
Single bulged U
geometric
IL_3NDB_005
IL_89505.4
IL_6ZN5_0481/2/928:931,
1/2/1010:1013
Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_6ZN5_0491/2/931:935,
1/2/1007:1010
Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6ZN5_0501/2/942:945,
1/2/981:984
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6ZN5_0511/2/952:956,
1/2/967:974
Kink-turn
homologous
IL_4V88_434
NA
IL_6ZN5_0521/2/1042:1047,
1/2/1071:1073
Other IL
geometric
IL_4V88_435
NA
IL_6ZN5_0531/2/1047:1051,
1/2/1067:1071
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6ZN5_0541/2/1091:1093,
1/2/1152:1158
No text annotation
homologous
IL_4V88_437
NA
IL_6ZN5_0551/2/1098:1101,
1/2/1131:1134
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6ZN5_0561/2/1101:1103,
1/2/1129:1131
Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_87907.2
IL_6ZN5_0571/2/1108:1110,
1/2/1123:1124
Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZN5_0581/2/1168:1175,
1/2/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6ZN5_0591/2/1203:1204,
1/2/1694:1696
Single bulged A
homologous
IL_4V88_441
NA
IL_6ZN5_0601/2/1206:1208,
1/2/1691:1692
Single bulged G
homologous
IL_4V88_442
NA
IL_6ZN5_0611/2/1214:1217,
1/2/1681:1685
C-loop
homologous
IL_4V88_443
NA
IL_6ZN5_0621/2/1230:1232,
1/2/1526:1528
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZN5_0631/2/1235:1236,
1/2/1521:1523
Minor groove platform
homologous
IL_4V88_445
NA
IL_6ZN5_0641/2/1270:1272,
1/2/1510:1512
Isolated non-canonical cWW pair
geometric
IL_6IA2_004
IL_87907.2
IL_6ZN5_0651/2/1282:1287,
1/2/1314:1315
No text annotation
IL_6ZN5_0941/2/1282:1290,
1/2/1309:1315
No text annotation
IL_6ZN5_0661/2/1287:1290,
1/2/1309:1314
No text annotation
IL_6ZN5_0671/2/1291:1293,
1/2/1306:1308
No text annotation
homologous
IL_4V88_448
NA
IL_6ZN5_0681/2/1325:1327,
1/2/1502:1503
Single bulged U
homologous
IL_4V88_449
NA
IL_6ZN5_0691/2/1329:1333,
1/2/1498:1500
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_6ZN5_0951/2/1329:1335,
1/2/1492:1500
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6ZN5_0701/2/1333:1335,
1/2/1492:1498
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_6ZN5_0711/2/1337:1338,
1/2/1488:1490
Single bulged A
homologous
IL_4V88_452
NA
IL_6ZN5_0721/2/1347:1349,
1/2/1380:1382
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6ZN5_0731/2/1363:1365,
1/2/1374:1375
Minor groove platform
homologous
IL_4V88_454
NA
IL_6ZN5_0741/2/1395:1399,
1/2/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_85033.2
IL_6ZN5_0751/2/1402:1405,
1/2/1441:1444
Minor groove platform
homologous
IL_4V88_456
NA
IL_6ZN5_0761/2/1412:1413,
1/2/1427:1429
Single bulged G
geometric
IL_2IZN_001
IL_00225.14
IL_6ZN5_0771/2/1537:1539,
1/2/1594:1596
Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_87907.2
IL_6ZN5_0961/2/1541:1550,
1/2/1582:1592
No text annotation
IL_6ZN5_0781/2/1550:1558,
1/2/1577:1582
180 degree turn
geometric
IL_4LFB_052
IL_11344.2
IL_6ZN5_0791/2/1560:1562,
1/2/1573:1575
Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_6ZN5_0801/2/1604:1610,
1/2/1629:1635
No text annotation
homologous
IL_8C3A_469
NA
IL_6ZN5_0811/2/1700:1702,
1/2/1833:1836
No text annotation
homologous
IL_4V88_463
NA
IL_6ZN5_0821/2/1702:1705,
1/2/1829:1833
No text annotation
geometric
IL_4V88_464
NA
IL_6ZN5_0831/2/1706:1708,
1/2/1826:1828
Isolated non-canonical cWW pair
geometric
IL_4V83_235
IL_07785.1
IL_6ZN5_1001/2/1708:1711,
1/2/1822:1826
No text annotation
IL_6ZN5_0981/2/1714:1722,
1/2/1812:1819
No text annotation
IL_6ZN5_0861/2/1729:1731,
1/2/1803:1805
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6ZN5_0871/2/1733:1736,
1/2/1798:1801
Double sheared
homologous
IL_4V88_471
NA
IL_6ZN5_0881/2/1739:1741,
1/2/1793:1795
Isolated non-canonical cWW pair
geometric
IL_4E48_003
IL_87907.2
IL_6ZN5_0891/2/1742:1746,
1/2/1788:1792
Triple sheared
homologous
IL_4V88_474
NA
IL_6ZN5_0901/2/1750:1751,
1/2/1782:1784
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_6ZN5_0911/2/1751:1752,
1/2/1780:1782
Single stack bend
geometric
IL_5J7L_032
IL_26793.1

Problematic loops

#loop idProblemSequence
IL_6ZN5_013No text annotation
IL_6ZN5_018No text annotation
IL_6ZN5_040No text annotation
IL_6ZN5_047Isolated non-canonical cWW pair
IL_6ZN5_097No text annotation
IL_6ZN5_084No text annotation
IL_6ZN5_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZN5_0011/2/40:41,
1/2/481:487,
1/2/512:514
No text annotation
geometric
J3_4V88_078
NA
J3_6ZN5_0131/2/40:47,
1/2/479:487,
1/2/512:514
No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_6ZN5_0021/2/816:819,
1/2/829:831,
1/2/843:848
No text annotation
homologous
J3_4V88_032
NA
J3_6ZN5_0031/2/938:941,
1/2/985:993,
1/2/1000:1004
No text annotation
homologous
J3_4V88_033
NA
J3_6ZN5_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151
No text annotation
J3_6ZN5_0051/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680
No text annotation
homologous
J3_4V88_035
NA
J3_6ZN5_0061/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641
No text annotation
homologous
J3_4V88_036
NA
J3_6ZN5_0071/2/1237:1244,
1/2/1255:1266,
1/2/1516:1520
No text annotation
homologous
J3_8C3A_040
NA
J3_6ZN5_0081/2/1272:1277,
1/2/1320:1324,
1/2/1504:1510
No text annotation
homologous
J3_4V88_038
NA
J3_6ZN5_0091/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486
No text annotation
homologous
J3_4V88_039
NA
J3_6ZN5_0101/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379
No text annotation
homologous
J3_8C3A_085
NA
J3_6ZN5_0111/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479
No text annotation
J3_6ZN5_0121/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638
No text annotation
homologous
J3_8C3A_044
NA
J4_6ZN5_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432
No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_6ZN5_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161
No text annotation
homologous
J4_8C3A_022
NA
J5_6ZN5_0011/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644
No text annotation
homologous
J5_8C3A_018
NA
J5_6ZN5_0021/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:595,
1/2/641:644
No text annotation
J5_6ZN5_0031/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:459,
1/2/470:474
No text annotation
homologous
J5_8C3A_020
NA
J5_6ZN5_0041/2/124:130,
1/2/182:185,
1/2/214:215,
1/2/310:312,
1/2/337:339
No text annotation

Problematic loops

No problematic loops


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