HL_6ZN5_016

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2571

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZN5|1|2|C|884
6ZN5|1|2|U|885
6ZN5|1|2|A|886
6ZN5|1|2|U|887
6ZN5|1|2|U|888
6ZN5|1|2|U|889
6ZN5|1|2|U|890
6ZN5|1|2|G|891
6ZN5|1|2|U|892
6ZN5|1|2|U|893
6ZN5|1|2|G|894
6ZN5|1|2|G|895
6ZN5|1|2|U|896
6ZN5|1|2|U|897
6ZN5|1|2|U|898
6ZN5|1|2|U|899
6ZN5|1|2|C|900
6ZN5|1|2|G|901
6ZN5|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11