HL_6ZOJ_009
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZOJ|1|2|C|450, 6ZOJ|1|2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZOJ_009 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0843
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZOJ|1|2|C|441
6ZOJ|1|2|C|442
6ZOJ|1|2|U|443
6ZOJ|1|2|G|444
6ZOJ|1|2|A|445
6ZOJ|1|2|G|446
6ZOJ|1|2|A|447
6ZOJ|1|2|A|448
6ZOJ|1|2|A|449
6ZOJ|1|2|C|450
6ZOJ|1|2|G|451
6ZOJ|1|2|G|452
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain Y
- 40S ribosomal protein S24
Coloring options: