HL_6ZOJ_017

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOJ_017 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5911

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ZOJ|1|2|C|884
6ZOJ|1|2|U|885
6ZOJ|1|2|A|886
6ZOJ|1|2|U|887
6ZOJ|1|2|U|888
6ZOJ|1|2|U|889
6ZOJ|1|2|U|890
6ZOJ|1|2|G|891
6ZOJ|1|2|U|892
6ZOJ|1|2|U|893
6ZOJ|1|2|G|894
6ZOJ|1|2|G|895
6ZOJ|1|2|U|896
6ZOJ|1|2|U|897
6ZOJ|1|2|U|898
6ZOJ|1|2|U|899
6ZOJ|1|2|C|900
6ZOJ|1|2|G|901
6ZOJ|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains