HL_6ZOJ_020

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6ZOJ|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOJ_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2045

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZOJ|1|2|G|1054
6ZOJ|1|2|A|1055
6ZOJ|1|2|U|1056
6ZOJ|1|2|C|1057
6ZOJ|1|2|A|1058
6ZOJ|1|2|G|1059
6ZOJ|1|2|A|1060
6ZOJ|1|2|U|1061
6ZOJ|1|2|A|1062
6ZOJ|1|2|C|1063
6ZOJ|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26