HL_6ZON_017

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6ZON|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZON_017 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0765

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6ZON|1|2|U|820
6ZON|1|2|G|821
6ZON|1|2|U|822
6ZON|1|2|U|823
6ZON|1|2|C|824
6ZON|1|2|A|825
6ZON|1|2|A|826
6ZON|1|2|A|827
6ZON|1|2|G|828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24