RNA 3D Hub //

6ZON Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZON_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZON_0021/2/69:80No text annotation
geometric
HL_361D_002
NA
HL_6ZON_0031/2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6ZON_0051/2/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZON_0071/2/377:387No text annotation
HL_6ZON_0081/2/414:423No text annotation
geometric
HL_5TBW_015
NA
HL_6ZON_0091/2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6ZON_0101/2/462:467UNCG
homologous
HL_4V88_196
NA
HL_6ZON_0111/2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6ZON_0131/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_6ZON_0141/2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6ZON_0171/2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6ZON_0201/2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_6ZON_0211/2/994:999GNRA
homologous
HL_4V88_207
NA
HL_6ZON_0221/2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6ZON_0231/2/1113:1120No text annotation
HL_6ZON_0241/2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6ZON_0251/2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6ZON_0281/2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6ZON_0291/2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6ZON_0311/2/1460:1466No text annotation
homologous
HL_8C3A_222
NA
HL_6ZON_0341/2/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_6ZON_0361/2/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_6ZON_004Externally structured
HL_6ZON_006No text annotation
HL_6ZON_012No text annotation
HL_6ZON_015GNRA
HL_6ZON_016No text annotation
HL_6ZON_018No text annotation
HL_6ZON_019No text annotation
HL_6ZON_026No text annotation
HL_6ZON_027Anticodon loop related
HL_6ZON_030No text annotation
HL_6ZON_032GNRA
HL_6ZON_033No text annotation
HL_6ZON_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZON_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_6ZON_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6ZON_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_6ZON_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_6ZON_0051/2/49:51,
1/2/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZON_0061/2/57:62,
1/2/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_6ZON_0071/2/63:68,
1/2/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_6ZON_0081/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_6ZON_0091/2/110:112,
1/2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.3
IL_6ZON_0101/2/112:115,
1/2/348:349		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZON_0111/2/116:121,
1/2/343:347		No text annotation
IL_6ZON_0121/2/123:124,
1/2/339:341		Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZON_0141/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZON_0151/2/152:154,
1/2/164:166		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_6ZON_0161/2/188:192,
1/2/207:211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_6ZON_0171/2/216:219,
1/2/302:309		No text annotation
IL_6ZON_0181/2/219:221,
1/2/300:302		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_01003.3
IL_6ZON_0201/2/312:314,
1/2/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZON_0211/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_6ZON_0221/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZON_0231/2/366:371,
1/2/393:394		No text annotation
IL_6ZON_0241/2/411:413,
1/2/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_6ZON_0251/2/437:439,
1/2/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6ZON_0261/2/459:461,
1/2/468:470		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZON_0271/2/487:489,
1/2/511:512		Single bulged U
homologous
IL_4V88_407
NA
IL_6ZON_0281/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_6ZON_0291/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_6ZON_0301/2/529:530,
1/2/554:556		Single bulged A
homologous
IL_4V88_409
NA
IL_6ZON_0311/2/563:565,
1/2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_6ZON_0321/2/566:569,
1/2/581:584		tSH-tHW
geometric
IL_5UNE_005
IL_76776.1
IL_6ZON_0331/2/599:606,
1/2/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6ZON_0341/2/606:608,
1/2/635:636		Single bulged U
homologous
IL_4V88_414
NA
IL_6ZON_0351/2/611:617,
1/2/624:632		Kink-turn related
homologous
IL_8C3A_425
NA
IL_6ZON_0361/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_6ZON_0371/2/665:671,
1/2/1161:1162		No text annotation
homologous
IL_4V88_416
NA
IL_6ZON_0381/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZON_0391/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6ZON_0411/2/694:696,
1/2/734:736		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.3
IL_6ZON_0431/2/801:803,
1/2/860:864		No text annotation
IL_6ZON_0441/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZON_0451/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_6ZON_0461/2/874:876,
1/2/910:912		Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_01003.3
IL_6ZON_0471/2/877:879,
1/2/907:909		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_6ZON_0481/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6ZON_0941/2/925:927,
1/2/1014:1017		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_6ZON_0951/2/928:931,
1/2/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_8P9A_419
IL_15225.2
IL_6ZON_0511/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6ZON_0521/2/942:945,
1/2/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6ZON_0531/2/951:956,
1/2/967:975		Kink-turn
geometric
IL_4LFB_031
IL_95727.1
IL_6ZON_0541/2/1041:1047,
1/2/1071:1074		No text annotation
IL_6ZON_0551/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6ZON_0561/2/1091:1093,
1/2/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_6ZON_0571/2/1098:1101,
1/2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6ZON_0581/2/1101:1103,
1/2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_01003.3
IL_6ZON_0591/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZON_0601/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6ZON_0611/2/1203:1204,
1/2/1694:1696		Single bulged A
homologous
IL_4V88_441
NA
IL_6ZON_0621/2/1206:1208,
1/2/1691:1692		Single bulged G
homologous
IL_4V88_442
NA
IL_6ZON_0961/2/1214:1217,
1/2/1681:1685		C-loop
homologous
IL_8C3A_449
NA
IL_6ZON_0641/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZON_0971/2/1230:1235,
1/2/1523:1528		No text annotation
IL_6ZON_0981/2/1329:1338,
1/2/1488:1500		No text annotation
IL_6ZON_0701/2/1336:1338,
1/2/1488:1491		No text annotation
IL_6ZON_0711/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6ZON_0721/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_5ML7_009
IL_34520.3
IL_6ZON_0731/2/1395:1399,
1/2/1447:1450		No text annotation
IL_6ZON_0741/2/1399:1408,
1/2/1439:1447		No text annotation
IL_6ZON_0991/2/1541:1550,
1/2/1582:1592		No text annotation
IL_6ZON_0781/2/1550:1558,
1/2/1577:1582		180 degree turn
geometric
IL_5J7L_055
NA
IL_6ZON_0811/2/1700:1702,
1/2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_6ZON_0821/2/1702:1705,
1/2/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_6ZON_0831/2/1706:1708,
1/2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_1U9S_007
IL_01003.3
IL_6ZON_0841/2/1708:1711,
1/2/1822:1826		No text annotation
IL_6ZON_0851/2/1714:1716,
1/2/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6ZON_0861/2/1717:1720,
1/2/1813:1816		Double sheared
homologous
IL_4V88_468
NA
IL_6ZON_0881/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6ZON_0891/2/1733:1736,
1/2/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_6ZON_0901/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_01003.3
IL_6ZON_0911/2/1742:1746,
1/2/1788:1792		Triple sheared
homologous
IL_4V88_474
NA
IL_6ZON_0921/2/1750:1751,
1/2/1782:1784		Single bulged C
geometric
IL_3D0U_001
IL_05642.2

Problematic loops

#loop idProblemSequence
IL_6ZON_013No text annotation
IL_6ZON_019No text annotation
IL_6ZON_040Isolated non-canonical cWW pair
IL_6ZON_042No text annotation
IL_6ZON_093No text annotation
IL_6ZON_049Tandem non-canonical cWW pairs
IL_6ZON_050No text annotation
IL_6ZON_063No text annotation
IL_6ZON_102Minor groove platform
IL_6ZON_065No text annotation
IL_6ZON_066No text annotation
IL_6ZON_067No text annotation
IL_6ZON_068Single bulged U
IL_6ZON_069No text annotation
IL_6ZON_075No text annotation
IL_6ZON_076Single bulged G
IL_6ZON_077No text annotation
IL_6ZON_079Tandem non-canonical cWW pairs
IL_6ZON_100Isolated non-canonical cWW pair
IL_6ZON_080No text annotation
IL_6ZON_101Isolated cWH basepair
IL_6ZON_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZON_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_6ZON_0131/2/40:47,
1/2/479:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_6ZON_0021/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_6ZON_0031/2/937:941,
1/2/985:993,
1/2/1000:1005		No text annotation
J3_6ZON_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_6ZON_0051/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_4V88_035
NA
J3_6ZON_0161/2/1223:1228,
1/2/1530:1532,
1/2/1638:1643		No text annotation
J3_6ZON_0071/2/1237:1245,
1/2/1254:1266,
1/2/1516:1520		No text annotation
J3_6ZON_0171/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_6ZON_0101/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_6ZON_0111/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J4_6ZON_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_6ZON_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8C3A_022
NA
J5_6ZON_0011/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_6ZON_0021/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:595,
1/2/641:644		No text annotation
J5_6ZON_0031/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:459,
1/2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_6ZON_0041/2/123:129,
1/2/183:185,
1/2/214:215,
1/2/310:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ZON_006No text annotation
J3_6ZON_014No text annotation
J3_6ZON_008No text annotation
J3_6ZON_015No text annotation
J3_6ZON_009No text annotation
J3_6ZON_012No text annotation

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