HL_6ZON_019

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

6ZON|1|2|U|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|U|883
6ZON|1|2|C|884
6ZON|1|2|U|885
6ZON|1|2|A|886
6ZON|1|2|U|887
6ZON|1|2|U|888
6ZON|1|2|U|889
6ZON|1|2|U|890
6ZON|1|2|G|891
6ZON|1|2|U|892
6ZON|1|2|U|893
6ZON|1|2|G|894
6ZON|1|2|G|895
6ZON|1|2|U|896
6ZON|1|2|U|897
6ZON|1|2|U|898
6ZON|1|2|U|899
6ZON|1|2|C|900
6ZON|1|2|G|901
6ZON|1|2|G|902
6ZON|1|2|A|903

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11