HL_6ZON_034
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6ZON|1|2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZON_034 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.4705
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZON|1|2|G|1658
6ZON|1|2|U|1659
6ZON|1|2|C|1660
6ZON|1|2|A|1661
6ZON|1|2|U|1662
6ZON|1|2|A|1663
6ZON|1|2|A|1664
6ZON|1|2|G|1665
6ZON|1|2|C|1666
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain k
- 40S ribosomal protein S18
- Chain l
- 40S ribosomal protein S29
- Chain o
- 40S ribosomal protein S15
- Chain x
- 40S ribosomal protein S19
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