HL_6ZON_035

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCGCCGGGGUGCCCUGGCGGAG

Length

23 nucleotides

Bulged bases

6ZON|1|2|G|1757, 6ZON|1|2|U|1761, 6ZON|1|2|U|1775

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|1751
6ZON|1|2|C|1752
6ZON|1|2|C|1753
6ZON|1|2|G|1754
6ZON|1|2|C|1755
6ZON|1|2|C|1756
6ZON|1|2|G|1757
6ZON|1|2|G|1758
6ZON|1|2|G|1759
6ZON|1|2|G|1760
6ZON|1|2|U|1761
6ZON|1|2|G|1771
6ZON|1|2|C|1772
6ZON|1|2|C|1773
6ZON|1|2|C|1774
6ZON|1|2|U|1775
6ZON|1|2|G|1776
6ZON|1|2|G|1777
6ZON|1|2|C|1778
6ZON|1|2|G|1779
6ZON|1|2|G|1780
6ZON|1|2|A|1781
6ZON|1|2|G|1782

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6