HL_6ZP4_006

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6ZP4|1|2|U|160, 6ZP4|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_006 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1544

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZP4|1|2|G|156
6ZP4|1|2|U|157
6ZP4|1|2|A|158
6ZP4|1|2|A|159
6ZP4|1|2|U|160
6ZP4|1|2|U|161
6ZP4|1|2|C|162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24