HL_6ZP4_007

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

6ZP4|1|2|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_007 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3803

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZP4|1|2|C|195
6ZP4|1|2|C|196
6ZP4|1|2|U|197
6ZP4|1|2|U|198
6ZP4|1|2|C|199
6ZP4|1|2|G|200
6ZP4|1|2|C|201
6ZP4|1|2|G|202
6ZP4|1|2|G|203
6ZP4|1|2|G|204

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S8