HL_6ZP4_022

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_022 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1571

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZP4|1|2|A|957
6ZP4|1|2|G|958
6ZP4|1|2|G|959
6ZP4|1|2|U|960
6ZP4|1|2|G|961
6ZP4|1|2|A|962
6ZP4|1|2|A|963
6ZP4|1|2|A|964
6ZP4|1|2|U|965
6ZP4|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Eukaryotic translation initiation factor 2 subunit 1

Chain i

40S ribosomal protein S14