HL_6ZP4_024
3D structure
- PDB id
- 6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6ZP4|1|2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZP4_024 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2229
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6ZP4|1|2|G|1054
6ZP4|1|2|A|1055
6ZP4|1|2|U|1056
6ZP4|1|2|C|1057
6ZP4|1|2|A|1058
6ZP4|1|2|G|1059
6ZP4|1|2|A|1060
6ZP4|1|2|U|1061
6ZP4|1|2|A|1062
6ZP4|1|2|C|1063
6ZP4|1|2|C|1064
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 4
- Eukaryotic translation initiation factor 2 subunit 2
- Chain Q
- 40S ribosomal protein S26
- Chain Z
- Eukaryotic translation initiation factor 1
- Chain i
- 40S ribosomal protein S14
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