HL_6ZP4_025
3D structure
- PDB id
- 6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUCCCAU
- Length
- 8 nucleotides
- Bulged bases
- 6ZP4|1|2|C|1117
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZP4_025 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3165
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6ZP4|1|2|A|1113
6ZP4|1|2|U|1114
6ZP4|1|2|U|1115
6ZP4|1|2|C|1116
6ZP4|1|2|C|1117
6ZP4|1|2|C|1118
6ZP4|1|2|A|1119
6ZP4|1|2|U|1120
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 3 subunit A
- Chain C
- Eukaryotic translation initiation factor 3 subunit C
- Chain N
- Eukaryotic translation initiation factor 3 subunit D
- Chain R
- 40S ribosomal protein S27
- Chain p
- 40S ribosomal protein S3a
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