HL_6ZQB_003

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_003 not in the Motif Atlas

Geometric match to HL_6AZ4_001

Geometric discrepancy: 0.1751

The information below is about HL_6AZ4_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ZQB|1|D2|A|196
6ZQB|1|D2|G|197
6ZQB|1|D2|A|198
6ZQB|1|D2|A|199
6ZQB|1|D2|A|200
6ZQB|1|D2|U|201

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain JQ

Regulator of rDNA transcription protein 14