6ZQB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6ZQB_001 | 1/D2/4:9 | GNRA related | geometric HL_3OXE_002 HL_37569.1 | |
HL_6ZQB_004 | 1/D2/251:257 | Mini UNCG | geometric HL_4V9F_041 HL_90436.1 | |
HL_6ZQB_005 | 1/D2/301:305 | Mini UNCG | geometric HL_5U30_001 HL_90436.1 | |
HL_6ZQB_007 | 1/D2/424:433 | No text annotation | ||
HL_6ZQB_011 | 1/D3/154:160 | GNRA related | homologous HL_4V88_188 NA | |
HL_6ZQB_015 | 1/D3/330:338 | GNRA related | homologous HL_4V88_193 NA | |
HL_6ZQB_016 | 1/D3/368:377 | No text annotation | geometric HL_4V88_198 NA | |
HL_6ZQB_017 | 1/D3/393:404 | No text annotation | homologous HL_4V88_195 NA | |
HL_6ZQB_018 | 1/D3/414:419 | UNCG | homologous HL_4V88_196 NA | |
HL_6ZQB_020 | 1/D3/491:496 | GNRA variation | geometric HL_1L9A_001 NA | |
HL_6ZQB_021 | 1/D3/520:532 | No text annotation | homologous HL_4V88_199 NA | |
HL_6ZQB_022 | 1/D3/561:566 | No text annotation | geometric HL_5TBW_006 NA | |
HL_6ZQB_024 | 1/D3/900:909 | No text annotation | homologous HL_4V88_206 NA | |
HL_6ZQB_025 | 1/D3/937:942 | GNRA | homologous HL_4V88_207 NA | |
HL_6ZQB_026 | 1/D3/1055:1064 | Mini UNCG | geometric HL_4LFB_005 HL_90436.1 | |
HL_6ZQB_027 | 1/D3/1129:1139 | No text annotation | ||
HL_6ZQB_030 | 1/D3/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
HL_6ZQB_031 | 1/D3/1594:1602 | Mini UNCG | geometric HL_4OOG_001 NA | |
HL_6ZQB_032 | 1/D3/1629:1636 | No text annotation | geometric HL_2Y8W_001 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6ZQB_002 | UNCG variation | ||
HL_6ZQB_003 | GNRA | ||
HL_6ZQB_006 | GNRA | ||
HL_6ZQB_008 | No text annotation | ||
HL_6ZQB_009 | No text annotation | ||
HL_6ZQB_010 | No text annotation | ||
HL_6ZQB_012 | No text annotation | ||
HL_6ZQB_039 | No text annotation | ||
HL_6ZQB_013 | UNCG | ||
HL_6ZQB_014 | No text annotation | ||
HL_6ZQB_037 | UNCG variation | ||
HL_6ZQB_019 | No text annotation | ||
HL_6ZQB_023 | No text annotation | ||
HL_6ZQB_028 | No text annotation | ||
HL_6ZQB_029 | No text annotation | ||
HL_6ZQB_033 | GNRA | ||
HL_6ZQB_034 | No text annotation | ||
HL_6ZQB_035 | No text annotation | ||
HL_6ZQB_038 | No text annotation | ||
HL_6ZQB_040 | No text annotation | ||
HL_6ZQB_036 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6ZQB_001 | 1/D2/17:18, 1/D2/62:64 | Single bulged G | geometric IL_5TBW_037 NA | |
IL_6ZQB_110 | 1/D2/94:95, 1/D2/149:156 | No text annotation | ||
IL_6ZQB_003 | 1/D2/97:99, 1/D2/145:147 | Isolated cWH basepair | geometric IL_3SJ2_002 IL_10892.1 | |
IL_6ZQB_004 | 1/D2/100:105, 1/D2/139:144 | No text annotation | ||
IL_6ZQB_005 | 1/D2/107:110, 1/D2/136:137 | Single stack bend | geometric IL_5J7L_249 NA | |
IL_6ZQB_007 | 1/D2/167:172, 1/D2/224:228 | No text annotation | ||
IL_6ZQB_010 | 1/D2/238:240, 1/D2/273:274 | No text annotation | ||
IL_6ZQB_112 | 1/D2/245:247, 1/D2/265:268 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_01003.1 | |
IL_6ZQB_012 | 1/D2/250:251, 1/D2/257:262 | Multiple bulged bases | geometric IL_1R3E_002 IL_44609.1 | |
IL_6ZQB_013 | 1/D2/337:340, 1/D2/386:387 | Major groove minor groove platform; mini C-loop | geometric IL_4V9F_068 IL_73108.1 | |
IL_6ZQB_014 | 1/D2/340:341, 1/D2/384:386 | Single bulged A | geometric IL_1JZV_002 IL_14190.1 | |
IL_6ZQB_090 | 1/D2/340:343, 1/D2/381:386 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
IL_6ZQB_015 | 1/D2/341:343, 1/D2/381:384 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
IL_6ZQB_016 | 1/D2/346:349, 1/D2/375:378 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.1 | |
IL_6ZQB_017 | 1/D2/352:355, 1/D2/371:372 | No text annotation | ||
IL_6ZQB_113 | 1/D2/352:356, 1/D2/369:372 | No text annotation | ||
IL_6ZQB_018 | 1/D2/355:356, 1/D2/369:371 | Stack outside cWW | geometric IL_1NTA_001 IL_78536.1 | |
IL_6ZQB_114 | 1/D2/402:407, 1/D2/449:455 | No text annotation | ||
IL_6ZQB_020 | 1/D2/413:414, 1/D2/441:443 | Single stack bend | geometric IL_5J7L_032 NA | |
IL_6ZQB_115 | 1/D2/414:415, 1/D2/439:441 | Single bulged U | geometric IL_8F5G_001 IL_97561.1 | |
IL_6ZQB_116 | 1/D2/466:470, 1/D4/48:50 | No text annotation | geometric IL_4V9F_053 IL_86407.1 | |
IL_6ZQB_094 | 1/D2/497:498, 1/D2/540:542 | Major groove intercalation | geometric IL_1U9S_003 NA | |
IL_6ZQB_024 | 1/D2/501:503, 1/D2/533:537 | No text annotation | geometric IL_4V9F_072 IL_75527.1 | |
IL_6ZQB_025 | 1/D2/505:507, 1/D2/529:531 | Isolated non-canonical cWW pair | geometric IL_5MSF_001 IL_01003.1 | |
IL_6ZQB_096 | 1/D2/510:511, 1/D2/524:526 | Single bulged U | geometric IL_6UFH_004 NA | |
IL_6ZQB_097 | 1/D3/50:53, 1/D3/427:429 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
IL_6ZQB_030 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
IL_6ZQB_117 | 1/D3/113:116, 1/D3/300:301 | No text annotation | homologous IL_8CRE_398 IL_71421.1 | |
IL_6ZQB_032 | 1/D3/117:122, 1/D3/295:299 | No text annotation | homologous IL_4V88_393 NA | |
IL_6ZQB_035 | 1/D3/204:206, 1/D3/259:263 | No text annotation | ||
IL_6ZQB_036 | 1/D3/206:208, 1/D3/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
IL_6ZQB_039 | 1/D3/265:267, 1/D3/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
IL_6ZQB_043 | 1/D3/318:323, 1/D3/345:346 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
IL_6ZQB_045 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_6ZQB_046 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
IL_6ZQB_049 | 1/D3/482:483, 1/D3/504:506 | Single bulged A | homologous IL_4V88_409 NA | |
IL_6ZQB_050 | 1/D3/514:516, 1/D3/536:543 | No text annotation | ||
IL_6ZQB_051 | 1/D3/517:520, 1/D3/532:535 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
IL_6ZQB_052 | 1/D3/551:552, 1/D3/584:587 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.1 | |
IL_6ZQB_053 | 1/D3/552:559, 1/D3/568:584 | No text annotation | ||
IL_6ZQB_054 | 1/D3/624:626, 1/D3/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
IL_6ZQB_055 | 1/D3/627:631, 1/D3/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_6ZQB_059 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
IL_6ZQB_102 | 1/D3/868:869, 1/D3/958:960 | Single bulged U | geometric IL_2OIU_003 IL_97561.1 | |
IL_6ZQB_118 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs | homologous IL_8CRE_433 IL_15225.1 | |
IL_6ZQB_062 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
IL_6ZQB_119 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.1 | |
IL_6ZQB_064 | 1/D3/893:899, 1/D3/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
IL_6ZQB_120 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8CRE_440 IL_15225.1 | |
IL_6ZQB_066 | 1/D3/1051:1053, 1/D3/1066:1067 | Single stack bend | geometric IL_4C7O_002 NA | |
IL_6ZQB_067 | 1/D3/1117:1119, 1/D4/6:7 | Single bulged G | geometric IL_3IGI_004 IL_28408.1 | |
IL_6ZQB_121 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop | homologous IL_8P9A_431 IL_63596.12 | |
IL_6ZQB_122 | 1/D3/1173:1176, 1/D3/1463:1466 | Double sheared | geometric IL_4ZNP_002 IL_58355.1 | |
IL_6ZQB_073 | 1/D3/1495:1498, 1/D3/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
IL_6ZQB_074 | 1/D3/1650:1652, 1/D3/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
IL_6ZQB_075 | 1/D3/1653:1656, 1/D3/1744:1747 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 NA | |
IL_6ZQB_106 | 1/D3/1653:1658, 1/D3/1743:1747 | No text annotation | ||
IL_6ZQB_076 | 1/D3/1656:1658, 1/D3/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
IL_6ZQB_084 | 1/D4/78:85, 1/D4/325:329 | No text annotation | ||
IL_6ZQB_109 | 1/D4/85:96, 1/D4/320:325 | No text annotation | ||
IL_6ZQB_085 | 1/D4/97:98, 1/D4/317:319 | No text annotation | ||
IL_6ZQB_086 | 1/D4/111:115, 1/D4/252:259 | No text annotation | ||
IL_6ZQB_087 | 1/D4/115:199, 1/D4/250:252 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6ZQB_002 | No text annotation | ||
IL_6ZQB_006 | No text annotation | ||
IL_6ZQB_088 | No text annotation | ||
IL_6ZQB_111 | Isolated non-canonical cWW pair | ||
IL_6ZQB_008 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_009 | Isolated non-canonical cWW pair | ||
IL_6ZQB_011 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_089 | Partly complementary | ||
IL_6ZQB_091 | No text annotation | ||
IL_6ZQB_092 | No text annotation | ||
IL_6ZQB_093 | Isolated cWS basepair | ||
IL_6ZQB_019 | No text annotation | ||
IL_6ZQB_021 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_022 | No text annotation | ||
IL_6ZQB_023 | Isolated non-canonical cWW pair | ||
IL_6ZQB_095 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_026 | Single bulged G, near cWW | ||
IL_6ZQB_027 | Isolated non-canonical cWW contact | ||
IL_6ZQB_028 | No text annotation | ||
IL_6ZQB_098 | No text annotation | ||
IL_6ZQB_029 | No text annotation | ||
IL_6ZQB_099 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_031 | Multiple bulged bases, near cWW | ||
IL_6ZQB_033 | Isolated non-canonical cWW contact | ||
IL_6ZQB_034 | Double sheared | ||
IL_6ZQB_037 | No text annotation | ||
IL_6ZQB_038 | No text annotation | ||
IL_6ZQB_040 | No text annotation | ||
IL_6ZQB_041 | Single stack bend | ||
IL_6ZQB_042 | Kink-turn with non-sequential stacking | ||
IL_6ZQB_044 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_047 | C-loop | ||
IL_6ZQB_048 | Single bulged G | ||
IL_6ZQB_100 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_056 | No text annotation | ||
IL_6ZQB_057 | Single stack bend | ||
IL_6ZQB_058 | Isolated non-canonical cWW pair | ||
IL_6ZQB_101 | No text annotation | ||
IL_6ZQB_060 | Isolated non-canonical cWW pair | ||
IL_6ZQB_061 | No text annotation | ||
IL_6ZQB_063 | No text annotation | ||
IL_6ZQB_103 | No text annotation | ||
IL_6ZQB_065 | No text annotation | ||
IL_6ZQB_068 | No text annotation | ||
IL_6ZQB_069 | tSH-tHW-tHS-cWW | ||
IL_6ZQB_070 | No text annotation | ||
IL_6ZQB_123 | No text annotation | ||
IL_6ZQB_071 | No text annotation | ||
IL_6ZQB_072 | No text annotation | ||
IL_6ZQB_104 | Triple non-canonical cWW pairs | ||
IL_6ZQB_105 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_077 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_107 | Isolated non-canonical cWW pair | ||
IL_6ZQB_078 | Double sheared | ||
IL_6ZQB_079 | Isolated non-canonical cWW pair | ||
IL_6ZQB_080 | Tandem non-canonical cWW pairs | ||
IL_6ZQB_081 | No text annotation | ||
IL_6ZQB_082 | No text annotation | ||
IL_6ZQB_108 | Isolated tWW contact | ||
IL_6ZQB_083 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6ZQB_001 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation | homologous J3_8P9A_071 J3_01633.1 | |
J3_6ZQB_002 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation | homologous J3_4V88_033 NA | |
J3_6ZQB_003 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1636:1640 | No text annotation | ||
J3_6ZQB_006 | 1/D3/1161:1164, 1/D3/1581:1587, 1/D3/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
J3_6ZQB_004 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
J3_6ZQB_005 | 1/D4/105:111, 1/D4/259:263, 1/D4/308:310 | No text annotation | ||
J5_6ZQB_003 | 1/D2/291:299, 1/D2/307:333, 1/D2/391:397, 1/D2/460:462, 1/D4/54:62 | No text annotation | ||
J5_6ZQB_004 | 1/D3/30:35, 1/D3/473:479, 1/D3/509:514, 1/D3/543:546, 1/D3/592:596 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J4_6ZQB_001 | No text annotation | ||
J5_6ZQB_001 | No text annotation | ||
J5_6ZQB_002 | No text annotation |
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