HL_6ZQB_004

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

6ZQB|1|D2|U|253, 6ZQB|1|D2|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_004 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.1866

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6ZQB|1|D2|C|251
6ZQB|1|D2|A|252
6ZQB|1|D2|U|253
6ZQB|1|D2|C|254
6ZQB|1|D2|U|255
6ZQB|1|D2|U|256
6ZQB|1|D2|G|257

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JQ

Regulator of rDNA transcription protein 14

Chain UZ

Ribosome biogenesis protein UTP30