HL_6ZQB_005

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

6ZQB|1|D2|A|302, 6ZQB|1|D2|U|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_005 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1561

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZQB|1|D2|U|301
6ZQB|1|D2|A|302
6ZQB|1|D2|A|303
6ZQB|1|D2|U|304
6ZQB|1|D2|A|305

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UA

Periodic tryptophan protein 2

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UU

U3 small nucleolar RNA-associated protein 21