HL_6ZQB_009

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUU

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2497

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZQB|1|D2|G|554
6ZQB|1|D2|A|555
6ZQB|1|D2|U|582
6ZQB|1|D2|U|583

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain JM

rRNA-processing protein FCF2

Chain UF

U3 small nucleolar RNA-associated protein 6

Chain UR

U3 small nucleolar RNA-associated protein 18