HL_6ZQB_029

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2496

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6ZQB|1|D3|C|1274
6ZQB|1|D3|A|1275
6ZQB|1|D3|U|1276
6ZQB|1|D3|G|1433
6ZQB|1|D3|U|1434
6ZQB|1|D3|G|1435

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JH

Essential nuclear protein 1