3D structure

PDB id
6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZQB_033 not in the Motif Atlas
Geometric match to HL_1M5K_003
Geometric discrepancy: 0.3021
The information below is about HL_1M5K_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6ZQB|1|D3|G|1698
6ZQB|1|D3|G|1699
6ZQB|1|D3|C|1700
6ZQB|1|D3|A|1701
6ZQB|1|D3|A|1702
6ZQB|1|D3|C|1703

Current chains

Chain D3
18S rRNA

Nearby chains

Chain UV
U3 small nucleolar RNA-associated protein 22

Coloring options:


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