HL_6ZQB_037

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6ZQB|1|D3|U|277, 6ZQB|1|D3|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_037 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3111

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZQB|1|D3|C|275
6ZQB|1|D3|C|276
6ZQB|1|D3|U|277
6ZQB|1|D3|U|278
6ZQB|1|D3|G|279
6ZQB|1|D3|U|280
6ZQB|1|D3|G|281

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A