HL_6ZQB_039

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6ZQB|1|D3|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQB_039 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5227

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6ZQB|1|D3|C|190
6ZQB|1|D3|C|191
6ZQB|1|D3|U|192
6ZQB|1|D3|U|193
6ZQB|1|D3|U|194
6ZQB|1|D3|G|195

Current chains

Chain D3

18S rRNA

Nearby chains