HL_6ZQC_001

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_001 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.276

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

6ZQC|1|D2|C|4
6ZQC|1|D2|G|5
6ZQC|1|D2|A|6
6ZQC|1|D2|A|7
6ZQC|1|D2|A|8
6ZQC|1|D2|G|9

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UH

U3 small nucleolar RNA-associated protein 8

Chain UI

U3 small nucleolar RNA-associated protein 9

Chain UQ

NET1-associated nuclear protein 1