HL_6ZQC_023
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZQC|1|D3|U|766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQC_023 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3011
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6ZQC|1|D3|U|764
6ZQC|1|D3|G|765
6ZQC|1|D3|U|766
6ZQC|1|D3|U|767
6ZQC|1|D3|C|768
6ZQC|1|D3|A|769
6ZQC|1|D3|A|770
6ZQC|1|D3|A|771
6ZQC|1|D3|G|772
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CH
- Ribosomal RNA-processing protein 9
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DY
- 40S ribosomal protein S24-A
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