HL_6ZQD_012
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZQD|1|D3|C|402, 6ZQD|1|D3|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_012 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.085
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZQD|1|D3|C|393
6ZQD|1|D3|C|394
6ZQD|1|D3|U|395
6ZQD|1|D3|G|396
6ZQD|1|D3|A|397
6ZQD|1|D3|G|398
6ZQD|1|D3|A|399
6ZQD|1|D3|A|400
6ZQD|1|D3|A|401
6ZQD|1|D3|C|402
6ZQD|1|D3|G|403
6ZQD|1|D3|G|404
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DY
- 40S ribosomal protein S24-A
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