HL_6ZQD_014

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6ZQD|1|D3|A|452, 6ZQD|1|D3|U|454, 6ZQD|1|D3|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQD_014 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1694

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZQD|1|D3|U|450
6ZQD|1|D3|A|451
6ZQD|1|D3|A|452
6ZQD|1|D3|U|453
6ZQD|1|D3|U|454
6ZQD|1|D3|C|455
6ZQD|1|D3|A|456

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DY

40S ribosomal protein S24-A

Chain UT

U3 small nucleolar RNA-associated protein 20