HL_6ZQD_017
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUGCC
- Length
- 6 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|563
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_017 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.135
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6ZQD|1|D3|G|561
6ZQD|1|D3|G|562
6ZQD|1|D3|U|563
6ZQD|1|D3|G|564
6ZQD|1|D3|C|565
6ZQD|1|D3|C|566
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DX
- 40S ribosomal protein S23-A
- Chain UB
- Nucleolar complex protein 14
- Chain UK
- U3 small nucleolar RNA-associated protein 11
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