HL_6ZQD_025
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUUUUAAUG
- Length
- 10 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|1057, 6ZQD|1|D3|U|1058, 6ZQD|1|D3|U|1059, 6ZQD|1|D3|U|1060
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_025 not in the Motif Atlas
- Geometric match to HL_4V88_198
- Geometric discrepancy: 0.1799
- The information below is about HL_4V88_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6ZQD|1|D3|U|1055
6ZQD|1|D3|U|1056
6ZQD|1|D3|U|1057
6ZQD|1|D3|U|1058
6ZQD|1|D3|U|1059
6ZQD|1|D3|U|1060
6ZQD|1|D3|A|1061
6ZQD|1|D3|A|1062
6ZQD|1|D3|U|1063
6ZQD|1|D3|G|1064
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CN
- Ribosomal RNA-processing protein 7
- Chain DA
- 40S ribosomal protein S1-A
- Chain Db
- 40S ribosomal protein S27-A
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UV
- U3 small nucleolar RNA-associated protein 22
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