HL_6ZQD_027

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQD_027 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2697

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZQD|1|D3|C|1177
6ZQD|1|D3|G|1178
6ZQD|1|D3|G|1462

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CL

Ribosome biogenesis protein BMS1

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1

Chain UB

Nucleolar complex protein 14