HL_6ZQD_029
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAAUU
- Length
- 6 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|1557
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_029 not in the Motif Atlas
- Geometric match to HL_7A0S_007
- Geometric discrepancy: 0.2989
- The information below is about HL_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51020.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 14
Unit IDs
6ZQD|1|D3|G|1553
6ZQD|1|D3|U|1554
6ZQD|1|D3|A|1555
6ZQD|1|D3|A|1556
6ZQD|1|D3|U|1557
6ZQD|1|D3|U|1558
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DS
- 40S ribosomal protein S18-A
- Chain UK
- U3 small nucleolar RNA-associated protein 11
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