HL_6ZQE_017

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGUGCC

Length

6 nucleotides

Bulged bases

6ZQE|1|D3|U|563

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_017 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1444

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZQE|1|D3|G|561
6ZQE|1|D3|G|562
6ZQE|1|D3|U|563
6ZQE|1|D3|G|564
6ZQE|1|D3|C|565
6ZQE|1|D3|C|566

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CL

Ribosome biogenesis protein BMS1

Chain UB

Nucleolar complex protein 14

Chain UK

U3 small nucleolar RNA-associated protein 11