6ZQE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZQE_001 | UNCG variation | ||
| HL_6ZQE_002 | No text annotation | ||
| HL_6ZQE_003 | No text annotation | ||
| HL_6ZQE_004 | No text annotation | ||
| HL_6ZQE_005 | GNRA related | ||
| HL_6ZQE_006 | No text annotation | ||
| HL_6ZQE_007 | UNCG | ||
| HL_6ZQE_008 | T-loop with 1 bulged base | ||
| HL_6ZQE_009 | Mini UNCG | ||
| HL_6ZQE_010 | GNRA related | ||
| HL_6ZQE_011 | GNRA | ||
| HL_6ZQE_012 | No text annotation | ||
| HL_6ZQE_013 | UNCG | ||
| HL_6ZQE_014 | No text annotation | ||
| HL_6ZQE_015 | No text annotation | ||
| HL_6ZQE_016 | No text annotation | ||
| HL_6ZQE_017 | No text annotation | ||
| HL_6ZQE_018 | No text annotation | ||
| HL_6ZQE_019 | No text annotation | ||
| HL_6ZQE_020 | No text annotation | ||
| HL_6ZQE_021 | Pseudoknot geometry | ||
| HL_6ZQE_022 | No text annotation | ||
| HL_6ZQE_023 | GNRA | ||
| HL_6ZQE_024 | No text annotation | ||
| HL_6ZQE_025 | Mini UNCG | ||
| HL_6ZQE_026 | GNRA | ||
| HL_6ZQE_027 | No text annotation | ||
| HL_6ZQE_028 | GNRA | ||
| HL_6ZQE_029 | No text annotation | ||
| HL_6ZQE_030 | Mini UNCG | ||
| HL_6ZQE_031 | Purine riboswitch | ||
| HL_6ZQE_038 | No text annotation | ||
| HL_6ZQE_032 | GNRA | ||
| HL_6ZQE_033 | No text annotation | ||
| HL_6ZQE_034 | No text annotation | ||
| HL_6ZQE_035 | No text annotation | ||
| HL_6ZQE_036 | No text annotation | ||
| HL_6ZQE_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZQE_062 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop | homologous IL_4V88_443 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZQE_001 | Single bulged G | ||
| IL_6ZQE_082 | Single stack bend | ||
| IL_6ZQE_002 | No text annotation | ||
| IL_6ZQE_003 | Single stack bend | ||
| IL_6ZQE_004 | Single stack bend | ||
| IL_6ZQE_005 | Single bulged C | ||
| IL_6ZQE_006 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_007 | No text annotation | ||
| IL_6ZQE_008 | Minor groove platform | ||
| IL_6ZQE_009 | No text annotation | ||
| IL_6ZQE_010 | No text annotation | ||
| IL_6ZQE_011 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_012 | Multiple bulged bases | ||
| IL_6ZQE_013 | No text annotation | ||
| IL_6ZQE_014 | tWH-tWH-tHW-tHW | ||
| IL_6ZQE_015 | Isolated cWH basepair | ||
| IL_6ZQE_016 | Double sheared | ||
| IL_6ZQE_017 | Major groove platform with extra cWW | ||
| IL_6ZQE_018 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_019 | Single bulged A | ||
| IL_6ZQE_020 | No text annotation | ||
| IL_6ZQE_021 | Single bulged U | ||
| IL_6ZQE_022 | Kink-turn with non-sequential stacking | ||
| IL_6ZQE_023 | No text annotation | ||
| IL_6ZQE_024 | No text annotation | ||
| IL_6ZQE_025 | Isolated cWH basepair | ||
| IL_6ZQE_026 | Isolated near basepair | ||
| IL_6ZQE_027 | Single bulged U | ||
| IL_6ZQE_028 | C-loop | ||
| IL_6ZQE_029 | Single bulged G | ||
| IL_6ZQE_030 | Single bulged A | ||
| IL_6ZQE_083 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_031 | Minor groove platform | ||
| IL_6ZQE_032 | Minor groove platform | ||
| IL_6ZQE_033 | Multiple bulged bases | ||
| IL_6ZQE_034 | No text annotation | ||
| IL_6ZQE_035 | No text annotation | ||
| IL_6ZQE_036 | No text annotation | ||
| IL_6ZQE_037 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_038 | No text annotation | ||
| IL_6ZQE_039 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_084 | Single stack bend | ||
| IL_6ZQE_040 | No text annotation | ||
| IL_6ZQE_085 | No text annotation | ||
| IL_6ZQE_041 | No text annotation | ||
| IL_6ZQE_042 | No text annotation | ||
| IL_6ZQE_086 | No text annotation | ||
| IL_6ZQE_043 | No text annotation | ||
| IL_6ZQE_044 | Major groove minor groove platform; mini C-loop | ||
| IL_6ZQE_045 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_046 | No text annotation | ||
| IL_6ZQE_092 | No text annotation | ||
| IL_6ZQE_047 | Single stack bend | ||
| IL_6ZQE_048 | Single stack bend | ||
| IL_6ZQE_087 | No text annotation | ||
| IL_6ZQE_049 | Major groove platform; stack outside cWW | ||
| IL_6ZQE_050 | Single bulged U | ||
| IL_6ZQE_088 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_051 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_052 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_053 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_054 | Kink-turn related | ||
| IL_6ZQE_055 | Other IL | ||
| IL_6ZQE_056 | tSH-tHW-tHS | ||
| IL_6ZQE_057 | No text annotation | ||
| IL_6ZQE_058 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_059 | Single base bend | ||
| IL_6ZQE_089 | No text annotation | ||
| IL_6ZQE_060 | No text annotation | ||
| IL_6ZQE_061 | Single bulged U | ||
| IL_6ZQE_063 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_064 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_065 | No text annotation | ||
| IL_6ZQE_066 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_067 | No text annotation | ||
| IL_6ZQE_068 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_069 | Double sheared | ||
| IL_6ZQE_070 | Isolated non-canonical cWW pair | ||
| IL_6ZQE_071 | Tandem non-canonical cWW pairs | ||
| IL_6ZQE_072 | No text annotation | ||
| IL_6ZQE_073 | No text annotation | ||
| IL_6ZQE_093 | No text annotation | ||
| IL_6ZQE_090 | No text annotation | ||
| IL_6ZQE_074 | No text annotation | ||
| IL_6ZQE_075 | No text annotation | ||
| IL_6ZQE_091 | No text annotation | ||
| IL_6ZQE_076 | No text annotation | ||
| IL_6ZQE_077 | No text annotation | ||
| IL_6ZQE_078 | No text annotation | ||
| IL_6ZQE_079 | No text annotation | ||
| IL_6ZQE_080 | No text annotation | ||
| IL_6ZQE_094 | No text annotation | ||
| IL_6ZQE_081 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZQE_001 | No text annotation | ||
| J3_6ZQE_009 | No text annotation | ||
| J3_6ZQE_002 | No text annotation | ||
| J3_6ZQE_010 | No text annotation | ||
| J3_6ZQE_003 | No text annotation | ||
| J3_6ZQE_004 | No text annotation | ||
| J3_6ZQE_005 | No text annotation | ||
| J3_6ZQE_011 | No text annotation | ||
| J3_6ZQE_006 | No text annotation | ||
| J3_6ZQE_013 | No text annotation | ||
| J3_6ZQE_012 | No text annotation | ||
| J3_6ZQE_007 | No text annotation | ||
| J3_6ZQE_008 | No text annotation | ||
| J4_6ZQE_001 | No text annotation | ||
| J4_6ZQE_003 | No text annotation | ||
| J4_6ZQE_002 | No text annotation | ||
| J5_6ZQE_001 | No text annotation | ||
| J5_6ZQE_002 | No text annotation | ||
| J5_6ZQE_003 | No text annotation | ||
| J5_6ZQE_005 | No text annotation | ||
| J5_6ZQE_004 | No text annotation |
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