HL_6ZQE_019

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6ZQE|1|D3|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_019 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1545

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6ZQE|1|D3|U|764
6ZQE|1|D3|G|765
6ZQE|1|D3|U|766
6ZQE|1|D3|U|767
6ZQE|1|D3|C|768
6ZQE|1|D3|A|769
6ZQE|1|D3|A|770
6ZQE|1|D3|A|771
6ZQE|1|D3|G|772

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A